{
  "_id": "6a1051fcacfb0bcc41ca1606",
  "Package": "BayesPIM",
  "Title": "Bayesian Prevalence-Incidence Mixture Model",
  "Version": "1.0.1",
  "Authors@R": "person(\"Thomas\", \"Klausch\", email = \"t.klausch@amsterdamumc.nl\", role = c(\"aut\", \"cre\"))",
  "Description": "Models time-to-event data from interval-censored screening\nstudies. It accounts for latent prevalence at baseline and\nincorporates misclassification due to imperfect test\nsensitivity. For usage details, see the package vignette\n\"BayesPIM_intro\". Further details can be found in Klausch,\nLissenberg-Witte and Coupé (2026) <doi:10.1002/sim.70433>.",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/thomasklausch2/bayespim",
  "BugReports": "https://github.com/thomasklausch2/BayesPIM/issues",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "VignetteBuilder": "knitr",
  "Config/roxygen2/version": "8.0.0",
  "Repository": "https://thomasklausch2.r-universe.dev",
  "Date/Publication": "2026-05-07 15:04:12 UTC",
  "RemoteUrl": "https://github.com/thomasklausch2/bayespim",
  "RemoteRef": "HEAD",
  "RemoteSha": "7ef8c0aa1332f4d4ffa03d54a476b2376d98040a",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-09 10:34:44 UTC",
    "User": "root"
  },
  "Author": "Thomas Klausch [aut, cre]",
  "Maintainer": "Thomas Klausch <t.klausch@amsterdamumc.nl>",
  "MD5sum": "551843ead99b48b7adb4c9147df982e8",
  "_user": "thomasklausch2",
  "_type": "src",
  "_file": "BayesPIM_1.0.1.tar.gz",
  "_fileid": "9f21bd10ad956c8576a116a009d97c0aa44b4dfc78b64e2b6a721fdbb095ccbf",
  "_filesize": 390630,
  "_sha256": "9f21bd10ad956c8576a116a009d97c0aa44b4dfc78b64e2b6a721fdbb095ccbf",
  "_created": "2026-05-09T10:34:44.000Z",
  "_published": "2026-05-22T12:54:20.958Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77383397123,
      "time": 141,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6895037681"
    },
    {
      "job": 77383397486,
      "time": 137,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6895037531"
    },
    {
      "job": 77383397257,
      "time": 187,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6895041641"
    },
    {
      "job": 77383397256,
      "time": 136,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6895037512"
    },
    {
      "job": 77383397373,
      "time": 175,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6895037914"
    },
    {
      "job": 77383396980,
      "time": 337,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6895052204"
    },
    {
      "job": 77383397275,
      "time": 200,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6895038807"
    },
    {
      "job": 77383397124,
      "time": 231,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6895043518"
    },
    {
      "job": 77383396958,
      "time": 186,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6895024196"
    },
    {
      "job": 77383396526,
      "time": 110,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7160956762"
    },
    {
      "job": 77383397150,
      "time": 116,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6895035145"
    },
    {
      "job": 77383397636,
      "time": 146,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6895037857"
    },
    {
      "job": 77383397262,
      "time": 132,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6895036525"
    }
  ],
  "_buildurl": "https://github.com/r-universe/thomasklausch2/actions/runs/25598935067",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/thomasklausch2/bayespim",
  "_commit": {
    "id": "7ef8c0aa1332f4d4ffa03d54a476b2376d98040a",
    "author": "thomasklausch2 <thomas.klausch@gmail.com>",
    "committer": "thomasklausch2 <thomas.klausch@gmail.com>",
    "message": "Update README.md\n",
    "time": 1778166252
  },
  "_maintainer": {
    "name": "Thomas Klausch",
    "email": "t.klausch@amsterdamumc.nl"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "coda",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "mvtnorm",
      "role": "Imports"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "ggamma",
      "role": "Imports"
    },
    {
      "package": "doParallel",
      "role": "Imports"
    },
    {
      "package": "foreach",
      "role": "Imports"
    },
    {
      "package": "parallel",
      "role": "Imports"
    },
    {
      "package": "actuar",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "thomasklausch2",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-19",
      "n": 3
    }
  ],
  "_tags": [
    {
      "name": "v1.0.1",
      "date": "2026-05-07"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "thomasklausch2",
      "count": 20,
      "uuid": 27428467
    }
  ],
  "_userbio": {
    "uuid": 27428467,
    "type": "user",
    "name": "thomasklausch2"
  },
  "_downloads": {
    "count": 82,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BayesPIM"
  },
  "_devurl": "https://github.com/thomasklausch2/bayespim",
  "_topics": [
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/BayesPIM.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/thomasklausch2/bayespim",
  "_realowner": "thomasklausch2",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2025-03-22"
    },
    {
      "version": "1.0.1",
      "date": "2026-05-08"
    }
  ],
  "_exports": [
    "bayes.2S",
    "bayes.2S_seq",
    "gen.dat",
    "get.IC_2S",
    "get.ppd.2S",
    "search.prop.sd",
    "search.prop.sd_seq",
    "trim.mcmc"
  ],
  "_help": [
    {
      "page": "bayes.2S",
      "title": "Fitting Bayesian Prevalence-Incidence Mixture Model",
      "topics": [
        "bayes.2S"
      ]
    },
    {
      "page": "bayes.2S_seq",
      "title": "bayes.2S_seq: Bayesian Prevalence-Incidence Mixture Model (sequential processing)",
      "topics": [
        "bayes.2S_seq"
      ]
    },
    {
      "page": "gen.dat",
      "title": "gen.dat: Simulate Screening Data for a Prevalence-Incidence Mixture Model",
      "topics": [
        "gen.dat"
      ]
    },
    {
      "page": "get.IC_2S",
      "title": "Compute Information Criteria for a Bayesian Prevalence-Incidence Mixture Model",
      "topics": [
        "get.IC_2S"
      ]
    },
    {
      "page": "get.ppd.2S",
      "title": "Posterior Predictive Cumulative Incidence Function",
      "topics": [
        "get.ppd.2S"
      ]
    },
    {
      "page": "search.prop.sd",
      "title": "Automated Heuristic Search of a Proposal Standard Deviation for 'bayes.2S'",
      "topics": [
        "search.prop.sd"
      ]
    },
    {
      "page": "search.prop.sd_seq",
      "title": "Automated Heuristic Search of a Proposal Standard Deviation for 'bayes.2S' (sequential processing)",
      "topics": [
        "search.prop.sd_seq"
      ]
    },
    {
      "page": "trim.mcmc",
      "title": "Subset MCMC draws (burn-in and thinning)",
      "topics": [
        "trim.mcmc"
      ]
    }
  ],
  "_readme": "https://github.com/thomasklausch2/bayespim/raw/HEAD/README.md",
  "_rundeps": [
    "actuar",
    "coda",
    "codetools",
    "doParallel",
    "expint",
    "foreach",
    "ggamma",
    "iterators",
    "lattice",
    "MASS",
    "mvtnorm",
    "Rcpp"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "BayesPIM_intro.Rmd",
      "filename": "BayesPIM_intro.html",
      "title": "Introduction to BayesPIM",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Data generation",
        "Running the estimation (Gibbs sampler)",
        "Automated search for the proposal s.d.",
        "Model updating",
        "Cumulative Incidence Functions",
        "Information Criteria",
        "References"
      ],
      "created": "2025-03-04 13:24:47",
      "modified": "2026-05-07 14:53:07",
      "commits": 5
    }
  ],
  "_score": 3.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "bayespim",
  "_universes": [
    "thomasklausch2"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.1",
      "date": "2026-05-09T10:37:08.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "7ef8c0aa1332f4d4ffa03d54a476b2376d98040a",
      "fileid": "4e61dbdf646347f93f5b0d978ec44164c072c8d6e43b3a6e9646b76a141dbba5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/thomasklausch2/actions/runs/25598935067"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.1",
      "date": "2026-05-09T10:37:04.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "7ef8c0aa1332f4d4ffa03d54a476b2376d98040a",
      "fileid": "c270482bfd37ae79592343ece0346d67ad3bc2642163b5377b9559029b5abc11",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/thomasklausch2/actions/runs/25598935067"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.1",
      "date": "2026-05-09T10:37:52.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "7ef8c0aa1332f4d4ffa03d54a476b2376d98040a",
      "fileid": "4f47f9d5cd4ac0e13d357bca9eca1510963ad39eb6c2f7ea31492c2da1c9984b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/thomasklausch2/actions/runs/25598935067"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.1",
      "date": "2026-05-09T10:37:03.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "7ef8c0aa1332f4d4ffa03d54a476b2376d98040a",
      "fileid": "df56b78c71f33e6a0ec87feff3e94a2019c5cc121c6b4251235d11f52ec89f9b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/thomasklausch2/actions/runs/25598935067"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.1",
      "date": "2026-05-09T10:37:15.000Z",
      "arch": "aarch64",
      "commit": "7ef8c0aa1332f4d4ffa03d54a476b2376d98040a",
      "fileid": "75f377a8c0151c8c3e05379d0fdf1491718c26db01b89166e5eb46052284f968",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/thomasklausch2/actions/runs/25598935067"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.1",
      "date": "2026-05-09T10:39:12.000Z",
      "arch": "x86_64",
      "commit": "7ef8c0aa1332f4d4ffa03d54a476b2376d98040a",
      "fileid": "bf2c32c9030b25d86554729cc5040c81cacb4a4ff01c5cf2e9362f0cfc75c11e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/thomasklausch2/actions/runs/25598935067"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.1",
      "date": "2026-05-09T10:36:59.000Z",
      "arch": "aarch64",
      "commit": "7ef8c0aa1332f4d4ffa03d54a476b2376d98040a",
      "fileid": "75e857d7802b4236ce11c5613fcb6ee000c6554476fd25e936c08c6da0739be0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/thomasklausch2/actions/runs/25598935067"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.1",
      "date": "2026-05-09T10:37:49.000Z",
      "arch": "x86_64",
      "commit": "7ef8c0aa1332f4d4ffa03d54a476b2376d98040a",
      "fileid": "d81326a2845be60c3af62b8a6c314d7bae4f86fb49ad4ad616168341b321de25",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/thomasklausch2/actions/runs/25598935067"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.1",
      "date": "2026-05-09T10:36:10.000Z",
      "arch": "x86_64",
      "commit": "7ef8c0aa1332f4d4ffa03d54a476b2376d98040a",
      "fileid": "3f450554caceab7503d53edd00272dd6a5331c31bd59206385394c23480e3fc7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/thomasklausch2/actions/runs/25598935067"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.1",
      "date": "2026-05-09T10:36:31.000Z",
      "arch": "x86_64",
      "commit": "7ef8c0aa1332f4d4ffa03d54a476b2376d98040a",
      "fileid": "a32be706a1b8c5eec59cb1746fdf1f2a0d06552a7898fef5aab73a9a9544431d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/thomasklausch2/actions/runs/25598935067"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.1",
      "date": "2026-05-09T10:36:19.000Z",
      "arch": "x86_64",
      "commit": "7ef8c0aa1332f4d4ffa03d54a476b2376d98040a",
      "fileid": "6c141158970d1310b987dcef52997e117bff7b6932cae39af242abc485c3d29b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/thomasklausch2/actions/runs/25598935067"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.1",
      "date": "2026-05-22T12:53:36.000Z",
      "arch": "emscripten",
      "commit": "7ef8c0aa1332f4d4ffa03d54a476b2376d98040a",
      "fileid": "dfef7490c809aeb0cd079a94299700437408defcba605a6b54f1419960e26132",
      "status": "success",
      "buildurl": "https://github.com/r-universe/thomasklausch2/actions/runs/25598935067"
    }
  ]
}